Requirements and Installation

Requirements

Software

  • Python 2.7.10+
  • Java 8+
  • Ant
  • BamQC

Python Modules

  • mg-tool-api
  • pylint
  • pytest

Installation

Directly from GitHub:

1
git clone https://github.com/Multiscale-Genomics/Bam_QC.git

Using pip:

1
pip install git+https://github.com/Multiscale-Genomics/Bam_QC.git